The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758)

Since historical times, the inherent human fascination with pearls turned the freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758) into a highly valuable cultural and economic resource. Although pearl harvesting in M. margaritifera is nowadays residual, other human threats have aggravated the species conservation status, especially in Europe. This mussel presents a myriad of rare biological features, e.g. high longevity coupled with low senescence and Doubly Uniparental Inheritance of mitochondrial DNA, for which the underlying molecular mechanisms are poorly known. Here, the first draft genome assembly of M. margaritifera was produced using a combination of Illumina Paired-end and Mate-pair approaches. The genome assembly was 2.4 Gb long, possessing 105,185 scaffolds and a scaffold N50 length of 288,726 bp. The ab initio gene prediction allowed the identification of 35,119 protein-coding genes. This genome represents an essential resource for studying this species’ unique biological and evolutionary features and ultimately will help to develop new tools to promote its conservation.     

赣江鱼类物种更新名录

赣江是长江的主要支流之一, 淡水鱼类多样性极其丰富, 但是目前对于该河流的鱼类多样性还未有充分的了解。本研究于2016年9月至2017年8月对赣江鱼类进行了实地调查, 结合历史文献资料并参考最新的分类学成果, 更新了赣江淡水鱼类名录。结果表明, 赣江共有淡水鱼类180种, 隶属于12目31科93属。其中, 土著鱼类174种, 外来鱼类6种。赣江鱼类以鲤形目为主; 鲤科种类最多, 其次是鲿科。更新的物种名录中, 包含23个新记录土著种, 其中有5个未被描述的新种; 有36个历史资料记载的种类被剔除出物种名录; 25个物种发生了分类地位的变更。此外, 本次调查有28种鱼类未采集到, 说明这些鱼类的种群数量正在急剧下降, 而这些鱼类分别属于洄游性、流水性和产漂流性卵等独特生态类型, 说明赣江鱼类多样性受到了严重的人为干扰。本研究所给出的赣江鱼类的更新物种名录, 可为今后的赣江鱼类多样性保护提供理论基础。     

Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae)

Habitat shifts are implicated as the cause of many vertebrate radiations, yet relatively few empirical studies quantify patterns of diversification following colonization of new habitats in fishes. The pufferfishes (family Tetraodon‐tidae) occur in several habitats, including coral reefs and freshwater, which are thought to provide ecological opportunity for adaptive radiation, and thus provide a unique system for testing the hypothesis that shifts to new habitats alter diversification rates. To test this hypothesis, we sequenced eight genes for 96 species of pufferfishes and closely related porcupine fishes, and added 19 species from sequences available in GenBank. We time‐calibrated the molecular phylogeny using three fossils, and performed several comparative analyses to test whether colonization of novel habitats led to shifts in the rate of speciation and body size evolution, central predictions of clades experiencing ecological adaptive radiation. Colonization of freshwater is associated with lower rates of cladogenesis in pufferfishes, although these lineages also exhibit accelerated rates of body size evolution. Increased rates of cladogenesis are associated with transitions to coral reefs, but reef lineages surprisingly exhibit significantly lower rates of body size evolution. These results suggest that ecological opportunity afforded by novel habitats may be limited for pufferfishes due to competition with other species, constraints relating to pufferfish life history and trophic ecology, and other factors.     

Two new species and a new subgenus of toothed Brachyhypopomus electric knifefishes (Gymnotiformes,Hypopomidae) from the central Amazon and considerations pertaining to the evolution of a monophasic electric organ discharge

We describe two new, closely related species of toothed Brachyhypopomus (Hypopomidae: Gymnotiformes: Teleostei) from the central Amazon basin and create a new subgenus for them. Odontohypopomus, new subgenus of Brachyhypopomus, is diagnosed by (1) small teeth present on premaxillae; (2) medialmost two branchiostegal rays thin with blades oriented more vertically than remaining three rays; (3) background color in life (and to lesser extent in preservation) distinctly yellowish with head and sides peppered with small, widely spaced, very dark brown stellate chromatophores that greatly contrast with light background coloration; (4) a dark blotch or bar of subcutaneous pigment below the eye; (5) electric organ discharge waveform of very long duration (head-positive phase approx. 2 milliseconds or longer, head-negative phase shorter or absent) and slow pulse repetition rate (3–16 Hz). The type species of the new subgenus, Brachyhypopomus (Odontohypopomus) walteri sp. n., is diagnosed by the following additional character states: (1) subcutaneous dark pigment at base of orbit particularly prominent, (2) body semi-translucent and nearly bright yellow background coloration in life, (3) a biphasic electric organ discharge (EOD) waveform of very long duration (between 3.5 and 4 milliseconds at 25° C) with head-positive first phase significantly longer than second head-negative phase in both sexes. Brachyhypopomus (Odontohypopomus) bennetti sp. n. is diagnosed by two character states in addition to those used to diagnose the subgenus Odontohypopomus: (1) a deep electric organ, visible as large semi-transparent area, occupying approximately 14–17% body depth directly posterior to the abdominal cavity in combination with a short, but deep, caudal filament, and (2) a monophasic, head-positive EOD waveform, approximately 2.1 milliseconds in duration in both sexes. These are the only described rhamphichthyoid gymnotiforms with oral teeth, and Brachyhypopomus bennetti is the first Brachyhypopomus reported to have a monophasic (head-positive) EOD waveform. Unlike biphasic species, the waveform of its EOD is largely unaffected by tail damage from predators. Such injuries are common among specimens in our collections. This species’ preference for floating meadow habitat along the major channels of the Amazon River basin may put it at particularly high risk of predation and “tail grazing.”     

Systematics of a widely distributed western North American springsnail,Pyrgulopsis?micrococcus (Caenogastropoda,Hydrobiidae), with descriptions?of?three new congeners

We describe three new species of springsnails (genus Pyrgulopsis) from the Amargosa River basin, California and Nevada (P. licina sp. n., P. perforata sp. n., P. sanchezi sp. n.), each of which was previously considered to be part of P. micrococcus. We also restrict P. micrococcus to its type locality area (Oasis Valley) and redefine a regional congener, P. turbatrix, to include populations from the central Death Valley region and San Bernardino Mountains that had been previously identified as P. micrococcus. The five species treated herein form genetically distinct lineages that differ from each other by 4.2–12.6% for mtCOI and 5.2–13.6% for mtNDI (based on previously published and newly obtained data), and are diagnosable by shell and/or penial characters. The new molecular data presented herein confirm sympatry of P. licina and P. sanchezi in Ash Meadows (consistent with morphological evidence) and delineate an additional lineage of P. micrococcus (in the broad sense) that we do not treat taxonomically owing to the paucity of morphological material. Conservation measures are needed to ensure the long term persistence of populations of P. micrococcus and a genetically differentiated lineage of P. sanchezi which live in disturbed habitats on private lands.     

A new species of Gyraulus (Gastropoda: Planorbidae) from Ancient Lake Lugu,Yunnan-Guizhou Plateau,Southwest China

A new aberrant species of the planorbid genus Gyraulus, Gyraulus luguhuensis n. sp., is described from Lake Lugu (Lugu-hu, in Chinese), Southwest China. The generic assignment with Gyraulus is based on features of the genital anatomy that are characteristic for members of that genus, in particular the presence of a chitinized penial stylet. Gyraulus luguhuensis n. sp. differs from most other congeners by its large, thick shell with an elevated spire. Similarly, aberrant shells are known from congeners in other Ancient Lakes worldwide indicating a potentially convergent evolution of shell characteristics in exclusively lacustrine species. Gyraulus luguhuensis differs from other lacustrine Gyraulus species with similarly large shells in having a sub-terminal penis pore and an unkeeled shell.     

Morphological and morphometrical description of the glochidia of Westralunio carteri Iredale, 1934 (Bivalvia: Unionoida: Hyriidae)

Most freshwater mussel (Bivalvia: Unionoida) larvae (glochidia in Margaritiferidae, Hyriidae and Unionidae) are fish parasites. Knowledge of the larval morphology and the mechanism of release in freshwater mussels is useful in species systematics and ecology. Westralunio carteri is the only unionoid from south-western Australia. Little information is available on its biology and its glochidia have never been described. The aim of this study was to describe the glochidia of W. carteri and method of their release. Glochidia within vitelline membranes were embedded in mucus which extruded from exhalent siphons of females during spring/summer; they then hatched from vitelline membranes but remained tethered by a larval thread and began characteristically “winking”. Shells (n=120) were subtriangular, 308 μm long (±0.83 SE), 251 μm high (±0.73 SE) and had a hinge length of 212 μm (±0.78 SE). Larval teeth were singular with interlocking cusps and convex or concave basal protuberances on opposing valves.